Topics
Setup
Lessons
Assignments
Misc assignments
- Set up your computer prior to the first class!
Programming assignments
Readings
- Sections 1-3 of Wickham, H. “Tidy Data.” Journal of Statistical Software 59:10 (2014).
- Learn a bit about Markdown.
- Conesa et al. A survey of best practices for RNA-seq data analysis. Genome Biology 17:13 (2016).
- Abstract and introduction sections of Himes et al. “RNA-Seq transcriptome profiling identifies CRISPLD2 as a glucocorticoid responsive gene that modulates cytokine function in airway smooth muscle cells.” PLoS ONE 9.6 (2014): e99625.
- Soneson et al. “Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences.” F1000Research 4 (2015).